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S E L E C T E D R E C E N T P A P E R S
S. E. Ahnert, I. Johnston, T. M. A. Fink, J. P. K. Doye, A. A. Louis,
‘Self-assembly, modularity and physical complexity”,
Physical Review E (2009, in press).
S. E. Ahnert, D. Garlaschelli, T. M. A. Fink and G Caldarelli,
“Applying weighted network measures to microarray distance matrices”,
Journal of Physics A, 41, 224011 (2008).
S. E. Ahnert and T. M. A. Fink,
"Clustering signature classifies directed networks",
Physical Review E, 78, 036112 (2008).
A. Barrat et al,
“Complex networks : from biology to information technology”,
Journal of Physics A, 41, 220301 (2008).
P. Bendich, D. Cohen-Steiner, H. Edelsbrunner, J. Harer and D. Morozov,
“Inferring local homology from sampled stratified spaces”,
Foundation of Computational Mathematics, 536 (2008).
M. Buchanan, G. Caldarelli, P. De Los Rios, F. Rao and M. Vendruscolo (eds),
Modelling Cell Biology with Networks,
(Cambridge University Press, Cambridge, 2010).
G. Caldarelli, A. Capocci and D. Garlaschelli,
“A self-organized model for network evolution”,
European Physics Journal B, 64, 585 (2008).
A. Capocci and G. Caldarelli,
“Folksonomies and clustering in the collaborative system CiteULike”,
Journal of Physics A, 41, 224016 (2008).
A. Capocci, F. Rao and G. Caldarelli
“Taxonomy and clustering in collaborative systems: the case of the on-line
encyclopedia Wikipedia”,
EPL (Europhysics Letters), 81, 28006 (2008).
C. C. Cartozo, D. Garlaschelli, C. Ricotta, M. Barthelemy and G. Caldarelli,
“Quantifying the taxonomic diversity in real species communities”,
Journal of Physics A, 41, 224012 (2008).
J. B. Coe, S. E. Ahnert and T. M. A. Fink,
"When are cellular automata random"?,
EPL (Europhysics Letters), 84, 50005 (2008).
D. Cohen-Steiner, H. Edelsbrunner and J. Harer,
“Extending persistence using Poincare and Lefschetz duality”,
Foundation of Computational Mathematics, 9, 79 (2009).
D. Cohen-Steiner, H. Edelsbrunner, J. Harer and D. Morozov,
“Persistent homology for kernels, images, and cokernels”,
Proceedings of the twentieth Annual ACM-SIAM Symposium on Discrete Algorithms, 1011 (2009).
M.-L. Dequeant et al,
"Comparison of pattern detection methods in microarray time series of the
segmentation clock",
PLoS ONE, 3, 2856 (2008).
H. Edelsbrunner and J. Harer,
“Computational Topology”,
(American Mathematical Society, 2009).
H. Edelsbrunner and J. Harer,
“The persistent Morse complex segmentation of a 3-manifold”,
Lecture Notes Computer Science, 36, 5903 (2009).
H. Edelsbrunner, J. Harer, A. Mascarenhas, V. Pascucci and J. Snoeyink,
“Time-varying Reeb graphs for continuous space-time data”,
Computational Geometry, 41, 149 (2008).
R. S. Farr and R. D. Groot,
"Close packing density of polydisperse hard spheres",
Journal of Chemical Physics, 131, 244104 (2009).
R. S. Farr and E. Griffiths,
“Fractal dimension of the Apollonian gasket in d dimensions”,
Physical Review E, 81, 061403 (2010).
R. S. Farr, A. Luque, M. J. Izzard and M. van Ginkel,
"Liquid phase sintering of two roughened ice crystals in sucrose solution: A
comparison to theory and simulation",
Computational Materials Science, 44, 1135 (2009).
R. S. Farr and Y. Mao,
"Fractal space frames and metamaterials for high mechanical efficiency",
EPL (Europhysics Letters), 84, 14001 (2008).
R. S. Farr and M. J. Izzard,
"Sintering behavior of two roughened crystals just after contact",
Physical Review E, 77, 041608 (2008).
T. M. A. Fink, J. B. Coe and S. E. Ahnert,
"Single elimination competition",
EPL (Europhysics Letters), 83, 60010 (2008).
A. Gabrielli and G. Caldarelli,
“Invasion percolation and the time scaling behavior of a queuing model of human
dynamics”,
Journal of Statistical Mechanics, 79, 02067 (2009).
A. Gabrielli and G. Caldarelli,
“Invasion percolation on a tree and queueing models”,
Physical Review E, 79, 041133 (2009).
A. Gabrielli and G. Caldarelli,
“Invasion percolation and critical transient in the Barabási model of human dynamics”,
Physical Review Letters 98, 208701 (2007).
D. Garlaschelli, A. Capocci and G. Caldarelli,
“Self-organized network evolution coupled to extremal dynamics”,
Nature Physics 3, 813 (2007).
G. Ghoshal, V. Zlati., G. Caldarelli and M. E. J. Newman,
“Random hypergraphs and their applications”,
Physical Review E, 79, 066118 (2009).
S. M. Goh et al,
"The mechanical properties of model-compacted tablets",
Journal of Materials Science, 43, 7171 (2008).
G. Iori, G. de Masi, O. V. Precup, G. Gabbi and G, Caldarelli,
“A network analysis of the Italian overnight money market”,
Journal of Economic Dynamics and Control, 32, 259 (2008).
A. Luque et al,
"Geometrical Monte Carlo model of liquid-phase sintering",
Mathematics and Computers in Simulation, 80, 1469 (2010).
D. A. Orlando, S. M. Brady, T. M. A. Fink, P. N. Benfey, S. E. Ahnert,
“Detecting separate time scales in genetic expression data”,
BMC Genomics (2009, in press).
N. Perra et al,
“PageRank equation and localization in the WWW”.
EPL (Europhysics Letters), 88, 48002 (2009).
V. Zlati. et al,
“On the rich-club effect in dense and weighted networks”,
European Physical Journal B, 67, 271 (2009).
V. Zlati., G. Ghoshal and G. Caldarelli,
“Hypergraph topological quantities for tagged social networks”,
Physical Review E, 80, 036118 (2009).
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